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RNVU1-4 RNA, variant U1 small nuclear 4 [ Homo sapiens (human) ]

Gene ID: 101954264, updated on 10-Oct-2023

Summary

Official Symbol
RNVU1-4provided by HGNC
Official Full Name
RNA, variant U1 small nuclear 4provided by HGNC
Primary source
HGNC:HGNC:48312
See related
Ensembl:ENSG00000277610 AllianceGenome:HGNC:48312
Gene type
snRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
vU1.4; vU1.5; RNU1-50; RNVU1-5; RNU1-102
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Genomic context

Location:
1p11.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (120942600..120942763)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (120951991..120952154)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (144311213..144311376, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904393 Neighboring gene peptidylprolyl isomerase A like 4A Neighboring gene uncharacterized LOC100996720 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:149577239-149577777 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:149577778-149578315 Neighboring gene long intergenic non-protein coding RNA 623 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:144496218-144496799 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:149601377-149602004 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:149602005-149602632 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:144493899-144494399 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:144493398-144493898 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144491667-144492381 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144310745-144311448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:144481363-144482061 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:144480662-144481362 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:149619223-149619776 Neighboring gene NBPF member 6 pseudogene Neighboring gene PDE4DIP pseudogene 4 Neighboring gene family with sequence similarity 91 member A4, pseudogene

Genomic regions, transcripts, and products

General gene information

Other Names

  • RNA, variant U1 small nuclear 5

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables pre-mRNA 5'-splice site binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104073.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC241377
    Related
    ENST00000612985.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    120942600..120942763
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    120951991..120952154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)