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GALNT7-DT GALNT7 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101930370, updated on 23-Nov-2021

Summary

Official Symbol
GALNT7-DTprovided by HGNC
Official Full Name
GALNT7 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55604
See related
Ensembl:ENSG00000245213
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in stomach (RPKM 1.4), colon (RPKM 1.3) and 23 other tissues See more
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Genomic context

See GALNT7-DT in Genome Data Viewer
Location:
4q34.1
Exon count:
8
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (173131933..173169652, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (174053084..174090803, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase like 6 Neighboring gene GALNTL6 antisense RNA 1 Neighboring gene uncharacterized LOC107986201 Neighboring gene RNA, 7SL, cytoplasmic 253, pseudogene Neighboring gene polypeptide N-acetylgalactosaminyltransferase 7 Neighboring gene microRNA 548t Neighboring gene high mobility group box 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134241.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC105285, BC040577, BC043556
  2. NR_134242.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains three consecutive alternate internal exons and contains a distinct 3' terminal exon, compared to variant 1.
    Source sequence(s)
    AC105285, BC040577
    Related
    ENST00000500914.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    173131933..173169652 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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