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LINC02842 long intergenic non-protein coding RNA 2842 [ Homo sapiens (human) ]

Gene ID: 101929628, updated on 8-Apr-2022

Summary

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Official Symbol
LINC02842provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2842provided by HGNC
Primary source
HGNC:HGNC:54378
See related
AllianceGenome:HGNC:54378
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.5) See more
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Genomic context

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See LINC02842 in Genome Data Viewer
Location:
8q12.3
Exon count:
25
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (61785005..62052282)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (62209011..62476334)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:62634171-62635370 Neighboring gene HNF1 motif-containing MPRA enhancer 71 Neighboring gene uncharacterized LOC105375871 Neighboring gene NFE2L2 motif-containing MPRA enhancer 61 Neighboring gene long intergenic non-protein coding RNA 2155 Neighboring gene C1GALT1 pseudogene 3 Neighboring gene asparaginyl-tRNA synthetase 1 pseudogene 2 Neighboring gene serine/threonine-protein kinase PLK1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    61785005..62052282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_428353.4 RNA Sequence

  2. XR_928956.3 RNA Sequence

  3. XR_928955.2 RNA Sequence

  4. XR_928953.2 RNA Sequence

  5. XR_928966.2 RNA Sequence

  6. XR_928962.3 RNA Sequence

  7. XR_007060931.1 RNA Sequence

  8. XR_001745926.3 RNA Sequence

  9. XR_428354.4 RNA Sequence

  10. XR_007060925.1 RNA Sequence

  11. XR_928963.1 RNA Sequence

  12. XR_428350.4 RNA Sequence

  13. XR_007060927.1 RNA Sequence

  14. XR_007060930.1 RNA Sequence

  15. XR_007060929.1 RNA Sequence

  16. XR_007060928.1 RNA Sequence

  17. XR_928967.1 RNA Sequence

  18. XR_928958.1 RNA Sequence

  19. XR_928959.1 RNA Sequence

  20. XR_007060926.1 RNA Sequence

  21. XR_928957.1 RNA Sequence

  22. XR_928954.4 RNA Sequence

  23. XR_928968.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    62209011..62476334
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079055.1 RNA Sequence

  2. XR_007079052.1 RNA Sequence

  3. XR_007079049.1 RNA Sequence

  4. XR_007079048.1 RNA Sequence

  5. XR_007079059.1 RNA Sequence

  6. XR_007079058.1 RNA Sequence

  7. XR_007079057.1 RNA Sequence

  8. XR_007079056.1 RNA Sequence

  9. XR_007079042.1 RNA Sequence

  10. XR_007079043.1 RNA Sequence

  11. XR_007079047.1 RNA Sequence

  12. XR_007079046.1 RNA Sequence

  13. XR_007079045.1 RNA Sequence

  14. XR_007079054.1 RNA Sequence

  15. XR_007079053.1 RNA Sequence

  16. XR_007079051.1 RNA Sequence

  17. XR_007079050.1 RNA Sequence

  18. XR_007079041.1 RNA Sequence

  19. XR_007079040.1 RNA Sequence

  20. XR_007079044.1 RNA Sequence

  21. XR_007079039.1 RNA Sequence

  22. XR_007079038.1 RNA Sequence

  23. XR_007079060.1 RNA Sequence

Nucleotide Protein
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