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GTF2IP23 general transcription factor IIi pseudogene 23 [ Homo sapiens (human) ]

Gene ID: 101929580, updated on 17-Jun-2024

Summary

Official Symbol
GTF2IP23provided by HGNC
Official Full Name
general transcription factor IIi pseudogene 23provided by HGNC
Primary source
HGNC:HGNC:51735
See related
AllianceGenome:HGNC:51735
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 3.2), thyroid (RPKM 0.9) and 23 other tissues See more
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Genomic context

See GTF2IP23 in Genome Data Viewer
Location:
7q11.21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (66847450..66884273)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (68067125..68103947)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (66312437..66349260)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene RAB guanine nucleotide exchange factor 1 Neighboring gene uncharacterized LOC124901840 Neighboring gene GTF2I repeat domain containing 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26088 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:66297948-66298509 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:66309442-66309942 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:66309943-66310444 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:66313905-66314406 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:66314407-66314906 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26090 Neighboring gene RNA, U6 small nuclear 1254, pseudogene Neighboring gene long intergenic non-protein coding RNA 2604

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135738.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC027644, AC073335, BF223663, DT932671

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    66847450..66884273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    68067125..68103947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)