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ITGB1-DT ITGB1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101929475, updated on 10-Oct-2023

Summary

Official Symbol
ITGB1-DTprovided by HGNC
Official Full Name
ITGB1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:53718
See related
Ensembl:ENSG00000229656 AllianceGenome:HGNC:53718
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LincIN
Expression
Low expression observed in reference dataset See more
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Genomic context

See ITGB1-DT in Genome Data Viewer
Location:
10p11.22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (32982551..33082102)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (33011282..33110816)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, H/ACA box 86 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3249 Neighboring gene integrin subunit beta 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:33245856-33246017 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2290 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2291 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3250 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:33252634-33253444 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:33269180-33269742 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:33269743-33270305 Neighboring gene AK3 pseudogene 5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:33284303-33284803 Neighboring gene MT-ND4L pseudogene 11 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:33338273-33338773 Neighboring gene RNA, 7SL, cytoplasmic 847, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:33364857-33365358 Neighboring gene ribosomal protein L7a pseudogene 53 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:33384895-33385560 Neighboring gene ITGB1 adjacent tumor promoting lncRNA Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:33422695-33423894 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:33460260-33460846 Neighboring gene uncharacterized LOC124902407 Neighboring gene neuropilin 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:33552654-33553853 Neighboring gene RNA, 7SL, cytoplasmic 398, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association scan of trait depression.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184020.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133333, AL365203
    Related
    ENST00000414157.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    32982551..33082102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    33011282..33110816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)