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LINC01659 long intergenic non-protein coding RNA 1659 [ Homo sapiens (human) ]

Gene ID: 101929374, updated on 13-May-2022

Summary

Official Symbol
LINC01659provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1659provided by HGNC
Primary source
HGNC:HGNC:52447
See related
Ensembl:ENSG00000234928 AllianceGenome:HGNC:52447
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in prostate (RPKM 2.6), colon (RPKM 0.8) and 6 other tissues See more
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Genomic context

See LINC01659 in Genome Data Viewer
Location:
22q11.23
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (23433564..23435071)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (23856319..23857826)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (23775751..23777258)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene carboxylesterase 5A pseudogene 1 Neighboring gene ZDHHC8B, pseudogene Neighboring gene coiled-coil domain containing 188B, pseudogene Neighboring gene family with sequence similarity 230 member I Neighboring gene long intergenic non-protein coding RNA 2557

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110538.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000344
    Related
    ENST00000449711.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    23433564..23435071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187632.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    79522..81029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    23856319..23857826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)