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LINC01198 long intergenic non-protein coding RNA 1198 [ Homo sapiens (human) ]

Gene ID: 101929344, updated on 25-Jan-2022

Summary

Official Symbol
LINC01198provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1198provided by HGNC
Primary source
HGNC:HGNC:49598
See related
Ensembl:ENSG00000231817 AllianceGenome:HGNC:49598
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Biomarker of malignant astrocytoma. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Restricted expression toward testis (RPKM 7.1) See more
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Genomic context

See LINC01198 in Genome Data Viewer
Location:
13q14.13
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (46455203..46466776, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (47029338..47040911, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 68, pseudogene Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 4 Neighboring gene keratin associated protein 21-1 pseudogene Neighboring gene olfactory receptor family 7 subfamily E member 101 pseudogene Neighboring gene COX17 pseudogene 1 Neighboring gene FKBP prolyl isomerase 1A pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120426.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI218618, AL138686, AW269438, CN278417, HY006332
    Related
    ENST00000671405.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    46455203..46466776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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