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SMIM2-AS1 SMIM2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101929212, updated on 23-Nov-2021

Summary

Official Symbol
SMIM2-AS1provided by HGNC
Official Full Name
SMIM2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:42674
See related
Ensembl:ENSG00000227258
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C3orf81-AS1; C13orf44-AS1
Expression
Broad expression in testis (RPKM 2.4), kidney (RPKM 2.0) and 14 other tissues See more
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Genomic context

See SMIM2-AS1 in Genome Data Viewer
Location:
13q14.11
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (44110549..44154079)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (44684685..44728215)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984576 Neighboring gene uncharacterized LOC105370182 Neighboring gene non-coding RNA in the aldehyde dehydrogenase 1A pathway Neighboring gene long intergenic non-protein coding RNA 390 Neighboring gene SMIM2 intronic transcript 1 Neighboring gene uncharacterized LOC107984601 Neighboring gene small integral membrane protein 2 Neighboring gene microRNA 8079

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.
EBI GWAS Catalog

General gene information

Other Names

  • C13orf44 antisense RNA 1 (non-protein coding)
  • SMIM2 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104064.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BF510376, BX100376, DB036693
  2. NR_104065.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 5' terminal exon and is shorter, compared to variant 1.
    Source sequence(s)
    BF510139, BF510376, BX100376, DB036693
    Related
    ENST00000619472.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    44110549..44154079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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