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THSD4-AS1 THSD4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101929196, updated on 25-Jan-2022

Summary

Official Symbol
THSD4-AS1provided by HGNC
Official Full Name
THSD4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51420
See related
Ensembl:ENSG00000259964 AllianceGenome:HGNC:51420
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward brain (RPKM 1.8) See more
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Genomic context

See THSD4-AS1 in Genome Data Viewer
Location:
15q23
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (71166812..71189059, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (71459151..71481398, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene thrombospondin type 1 domain containing 4 Neighboring gene cancer/testis associated 62 Neighboring gene high mobility group box 1 pseudogene 6 Neighboring gene uncharacterized LOC105370884 Neighboring gene ribosomal protein L17 pseudogene 39

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120348.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    DA243226, DA296094
  2. NR_120349.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two alternate internal exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    DA243226, DA296094, DA798087
  3. NR_120350.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site at an internal exon, and lacks an internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    DA243226, DA296094, DA302156
  4. NR_120351.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    DA243226, DA296094, DN992601
    Related
    ENST00000668533.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    71166812..71189059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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