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LINC01031 long intergenic non-protein coding RNA 1031 [ Homo sapiens (human) ]

Gene ID: 101929184, updated on 10-Dec-2024

Summary

Official Symbol
LINC01031provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1031provided by HGNC
Primary source
HGNC:HGNC:49017
See related
Ensembl:ENSG00000232077 AllianceGenome:HGNC:49017
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_00000361
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01031 in Genome Data Viewer
Location:
1q31.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (193304745..193365953)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (192651797..192713024)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (193273875..193335083)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene microRNA 1278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2269 Neighboring gene cell division cycle 73 Neighboring gene beta-1,3-galactosyltransferase 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:193324401-193325600 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2270 Neighboring gene uncharacterized LOC124904475 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2271 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2272 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:193538144-193538280 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:193583455-193584654 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:193692068-193692676 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:193692677-193693283 Neighboring gene uncharacterized LOC124904676 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:193710151-193710862 Neighboring gene ribosomal protein L23a pseudogene 22

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125789.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI147111, BX100123
    Related
    ENST00000420807.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    193304745..193365953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    192651797..192713024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)