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LINC01858 long intergenic non-protein coding RNA 1858 [ Homo sapiens (human) ]

Gene ID: 101929144, updated on 10-Oct-2023

Summary

Official Symbol
LINC01858provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1858provided by HGNC
Primary source
HGNC:HGNC:52676
See related
Ensembl:ENSG00000261615 AllianceGenome:HGNC:52676
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01858 in Genome Data Viewer
Location:
19p12
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (23054823..23061265, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (23190027..23196469, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (23237625..23244067, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 728 Neighboring gene BCL2 interacting protein 3 pseudogene 36 Neighboring gene long intergenic non-protein coding RNA 1859 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:23257625-23258372 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:23260515-23261088 Neighboring gene zinc finger protein 730 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:23276545-23277044 Neighboring gene ribosomal protein L5 pseudogene Neighboring gene BCL2 interacting protein 3 pseudogene 37 Neighboring gene sorting nexin 6 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110745.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC037873
    Related
    ENST00000564534.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    23054823..23061265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    23190027..23196469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)