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CASC18 cancer susceptibility 18 [ Homo sapiens (human) ]

Gene ID: 101929110, updated on 23-Nov-2021

Summary

Official Symbol
CASC18provided by HGNC
Official Full Name
cancer susceptibility 18provided by HGNC
Primary source
HGNC:HGNC:49463
See related
Ensembl:ENSG00000257859
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See CASC18 in Genome Data Viewer
Location:
12q23.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (105704203..105744063)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (106097981..106137841)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369956 Neighboring gene uncharacterized LOC105369955 Neighboring gene uncharacterized LOC105369958 Neighboring gene Sharpr-MPRA regulatory region 9585 Neighboring gene uncharacterized LOC105369959 Neighboring gene uncharacterized LOC107984435 Neighboring gene uncharacterized LOC105369960 Neighboring gene ST13, Hsp70 interacting protein pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • cancer susceptibility 18 (non-protein coding)
  • cancer susceptibility candidate 18 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110108.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two alternate exons compared to variant 1.
    Source sequence(s)
    AB849958
    Related
    ENST00000548557.1
  2. NR_110109.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AB849958, AB849961
  3. NR_110110.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate first exon and lacks two alternate exons compared to variant 1.
    Source sequence(s)
    AB849963
  4. NR_110111.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate first exon and lacks three alternate exons compared to variant 1.
    Source sequence(s)
    AC079851, AC084356

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    105704203..105744063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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