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PIK3CD-AS2 PIK3CD antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 101929074, updated on 10-Apr-2024

Summary

Official Symbol
PIK3CD-AS2provided by HGNC
Official Full Name
PIK3CD antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:51334
See related
Ensembl:ENSG00000231789 AllianceGenome:HGNC:51334
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in ovary (RPKM 1.7), thyroid (RPKM 1.6) and 21 other tissues See more
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Genomic context

Location:
1p36.22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (9672426..9687574, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (9215200..9230348, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (9732484..9747632, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta Neighboring gene ATAC-STARR-seq lymphoblastoid active region 134 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 135 Neighboring gene PIK3CD antisense RNA 1 Neighboring gene ribosomal protein L26 pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 136 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 229 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:9748072-9748266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:9749677-9750360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:9750361-9751042 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:9761057-9761631 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:9769519-9770216 Neighboring gene MPRA-validated peak57 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:9775415-9776390 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:9776391-9777366 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 231 Neighboring gene uncharacterized LOC124903839 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:9778914-9780113 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:9780296-9781272 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:9781273-9782247 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:9785121-9785329 Neighboring gene calsyntenin 1 Neighboring gene MPRA-validated peak58 silencer Neighboring gene mitotic spindle organizing protein 1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126366.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL691449
    Related
    ENST00000415330.4
  2. NR_126367.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AL691449
  3. NR_126368.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon and its transcription terminates earlier than variant 1, resulting in a shorter transcript.
    Source sequence(s)
    BC038541, BI763597

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    9672426..9687574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    9215200..9230348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)