U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01182 long intergenic non-protein coding RNA 1182 [ Homo sapiens (human) ]

Gene ID: 101929071, updated on 10-Oct-2023

Summary

Official Symbol
LINC01182provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1182provided by HGNC
Primary source
HGNC:HGNC:49564
See related
Ensembl:ENSG00000250634 AllianceGenome:HGNC:49564
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC01182 in Genome Data Viewer
Location:
4p15.33
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (13655179..13931228)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (13634889..13911000)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (13656803..13932852)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein L21 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:13641327-13641828 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:13641829-13642328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21328 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:13666052-13666590 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:13666591-13667128 Neighboring gene ribosomal protein L32 pseudogene 12 Neighboring gene uncharacterized LOC101929048 Neighboring gene uncharacterized LOC107986182 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:13893421-13894620 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:13906696-13907895 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:13908590-13909789 Neighboring gene C9orf78 pseudogene 2 Neighboring gene long intergenic non-protein coding RNA 1085 Neighboring gene Kruppel like factor 17 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.
EBI GWAS Catalog
The genetics of antipsychotic induced tremors: a genome-wide pathway analysis on the STEP-BD SCP sample.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121681.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007126, AC095052, AC098830
    Related
    ENST00000510907.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    13655179..13931228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    13634889..13911000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)