U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

IQCF5-AS1 IQCF5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101928999, updated on 17-Sep-2024

Summary

Official Symbol
IQCF5-AS1provided by HGNC
Official Full Name
IQCF5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41297
See related
Ensembl:ENSG00000235455 AllianceGenome:HGNC:41297
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 5.0) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See IQCF5-AS1 in Genome Data Viewer
Location:
3p21.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (51873596..51875767)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (51906557..51908729)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (51907612..51909783)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene IQ motif containing F2 Neighboring gene RNA, 7SL, cytoplasmic 504, pseudogene Neighboring gene IQ motif containing F5 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:51935927-51937126 Neighboring gene IQ motif containing F1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:51975282-51975930 Neighboring gene ribosomal RNA processing 9, U3 small nucleolar RNA binding protein

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109984.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097636
    Related
    ENST00000440723.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    51873596..51875767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    51906557..51908729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)