U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TTC14-DT TTC14 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101928856, updated on 10-Dec-2024

Summary

Official Symbol
TTC14-DTprovided by HGNC
Official Full Name
TTC14 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:52912
See related
Ensembl:ENSG00000239774 AllianceGenome:HGNC:52912
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See TTC14-DT in Genome Data Viewer
Location:
3q26.33
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (180480865..180602113, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (183282766..183403975, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (180198653..180319901, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20874 Neighboring gene RALBP1 pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 2053 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:180234098-180234598 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:180234599-180235099 Neighboring gene U8 small nucleolar RNA Neighboring gene RNA, U6 small nuclear 486, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20875 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:180323279-180323534 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14926 Neighboring gene tetratricopeptide repeat domain 14 Neighboring gene coiled-coil domain 39 molecular ruler complex subunit Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20876 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20877 Neighboring gene CCDC39 antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183700.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068298, AC104466, AC125618
  2. NR_183701.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068298, AC104466, AC125618
  3. NR_183702.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068298, AC125618
    Related
    ENST00000830821.1
  4. NR_183703.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068298, AC125618
  5. NR_183704.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068298, AC125618

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    180480865..180602113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    183282766..183403975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)