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LINC01807 long intergenic non-protein coding RNA 1807 [ Homo sapiens (human) ]

Gene ID: 101928765, updated on 13-May-2022

Summary

Official Symbol
LINC01807provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1807provided by HGNC
Primary source
HGNC:HGNC:52610
See related
Ensembl:ENSG00000232023 AllianceGenome:HGNC:52610
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward adrenal (RPKM 3.5) See more
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Genomic context

See LINC01807 in Genome Data Viewer
Location:
2q36.3
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (228483259..228611395, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (228965805..229093961, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (229347975..229476111, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene SPHK1 interactor, AKAP domain containing Neighboring gene RNA, U6 small nuclear 624, pseudogene Neighboring gene SNF8 pseudogene 1 Neighboring gene uncharacterized LOC105373921 Neighboring gene ribosomal protein L7 like 1 pseudogene 10 Neighboring gene ribosomal protein L17 pseudogene 14

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study of endometrial cancer in E2C2.
EBI GWAS Catalog
Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_151716.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009410, AC012070
    Related
    ENST00000432481.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    228483259..228611395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    228965805..229093961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)