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LINC02692 long intergenic non-protein coding RNA 2692 [ Homo sapiens (human) ]

Gene ID: 101928638, updated on 4-Mar-2025

Summary

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Official Symbol
LINC02692provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2692provided by HGNC
Primary source
HGNC:HGNC:18147
See related
AllianceGenome:HGNC:18147
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRR31; C9orf141
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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See LINC02692 in Genome Data Viewer
Location:
9q34.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (136969412..136972884)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (149203851..149207323)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (139863864..139867336)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20562 Neighboring gene complement C8 gamma chain Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20563 Neighboring gene lipocalin 12 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:139847365-139847546 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139853309-139853809 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139862419-139862920 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139862921-139863420 Neighboring gene uncharacterized LOC124902312 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139873016-139873995 Neighboring gene prostaglandin D2 synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide significant locus of beta-trace protein, a novel kidney function biomarker, identified in European and African Americans. Tin A, et al. Nephrol Dial Transplant, 2013 Jun. PMID 23328707, Free PMC Article
  2. DNA sequence and analysis of human chromosome 9. Humphray SJ, et al. Nature, 2004 May 27. PMID 15164053, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide significant locus of beta-trace protein, a novel kidney function biomarker, identified in European and African Americans.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Homology

Other Names

  • proline rich 31
  • proline-rich protein 31

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_157392.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL807752

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    136969412..136972884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    149203851..149207323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001101674.1: Suppressed sequence

    Description
    NM_001101674.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

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