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SMIM15-AS1 SMIM15 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101928630, updated on 12-Oct-2019

Summary

Official Symbol
SMIM15-AS1provided by HGNC
Official Full Name
SMIM15 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41293
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTC-436P18.1
Expression
Ubiquitous expression in colon (RPKM 3.8), kidney (RPKM 3.4) and 25 other tissues See more

Genomic context

See SMIM15-AS1 in Genome Data Viewer
Location:
5q12.1
Exon count:
4
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (61162316..61232080)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (60458323..60476270)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ERCC excision repair 8, CSA ubiquitin ligase complex subunit Neighboring gene ERCC8 antisense RNA 1 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 2 Neighboring gene small integral membrane protein 15 Neighboring gene long intergenic non-protein coding RNA 2057 Neighboring gene uncharacterized LOC105378993

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association analysis identifies 13 new risk loci for schizophrenia.
NHGRI GWA Catalog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109908.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008498, AC120117

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    61162316..61232080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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