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PIGBOS1 PIGB opposite strand 1 [ Homo sapiens (human) ]

Gene ID: 101928527, updated on 2-Mar-2021

Summary

Official Symbol
PIGBOS1provided by HGNC
Official Full Name
PIGB opposite strand 1provided by HGNC
Primary source
HGNC:HGNC:50696
See related
Ensembl:ENSG00000225973 MIM:618809
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HP06981
Expression
Ubiquitous expression in fat (RPKM 5.3), thyroid (RPKM 5.2) and 25 other tissues See more
Orthologs
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Genomic context

See PIGBOS1 in Genome Data Viewer
Location:
15q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210226 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (55317184..55348725, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (55609382..55611321, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ribosomal L24 domain containing 1 Neighboring gene RAB27A, member RAS oncogene family Neighboring gene Sharpr-MPRA regulatory region 6285 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class B Neighboring gene DNAAF4-CCPG1 readthrough (NMD candidate) Neighboring gene cell cycle progression 1 Neighboring gene microRNA 628 Neighboring gene chromosome 15 open reading frame 65 Neighboring gene dynein axonemal assembly factor 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
regulation of endoplasmic reticulum unfolded protein response IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to unfolded protein IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of mitochondrial outer membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein PIGBOS1
Names
PIGB opposite strand protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001308421.2NP_001295350.1  protein PIGBOS1

    See identical proteins and their annotated locations for NP_001295350.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, and 3 encode the same protein. This protein is conserved in mammals but has not been functionally-validated.
    Source sequence(s)
    AB593170, BQ434443, CA420894, HY126324
    Consensus CDS
    CCDS81884.1
    UniProtKB/Swiss-Prot
    A0A0B4J2F0
    Related
    ENSP00000484893.1, ENST00000436697.3
  2. NM_001308422.2NP_001295351.1  protein PIGBOS1

    See identical proteins and their annotated locations for NP_001295351.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' UTR. Variants 1, 2, and 3 encode the same protein. This protein is conserved in mammals but has not been functionally-validated.
    Source sequence(s)
    AB593170, BQ434443, CA420894
    Consensus CDS
    CCDS81884.1
    UniProtKB/Swiss-Prot
    A0A0B4J2F0
    Related
    ENSP00000482636.1, ENST00000567948.1
  3. NM_001308423.2NP_001295352.1  protein PIGBOS1

    See identical proteins and their annotated locations for NP_001295352.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in the 5' UTR. Variants 1, 2, and 3 encode the same protein. This protein is conserved in mammals but has not been functionally-validated.
    Source sequence(s)
    AB593170, BQ434443, CA420894
    Consensus CDS
    CCDS81884.1
    UniProtKB/Swiss-Prot
    A0A0B4J2F0

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210226

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    55317184..55348725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024449815.1XP_024305583.1  protein PIGBOS1 isoform X1

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