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LOC101928499 uncharacterized LOC101928499 [ Homo sapiens (human) ]

Gene ID: 101928499, updated on 10-Dec-2024

Summary

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Gene symbol
LOC101928499
Gene description
uncharacterized LOC101928499
See related
Ensembl:ENSG00000259203
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101928499 in Genome Data Viewer
Location:
15q21.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (52800166..52806439, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (50608459..50614725, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (53092363..53098636, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9437 Neighboring gene one cut homeobox 1 Neighboring gene Sharpr-MPRA regulatory region 217 Neighboring gene uncharacterized LOC105370824 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:53082820-53083588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:53083589-53084356 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:53086613-53087310 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:53087311-53088006 Neighboring gene uncharacterized LOC107983981 Neighboring gene ribosomal protein SA pseudogene 55 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187809.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016044
    Related
    ENST00000654059.4

  2. NR_187810.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016044

  3. NR_187811.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016044

  4. NR_187812.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016044

  5. NR_187813.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016044
    Related
    ENST00000781348.1

  6. NR_187814.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016044

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    52800166..52806439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    50608459..50614725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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