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LINC01679 long intergenic non-protein coding RNA 1679 [ Homo sapiens (human) ]

Gene ID: 101928399, updated on 23-Nov-2021

Summary

Official Symbol
LINC01679provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1679provided by HGNC
Primary source
HGNC:HGNC:52469
See related
Ensembl:ENSG00000237989
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_00029157
Expression
Broad expression in skin (RPKM 1.5), lymph node (RPKM 0.8) and 22 other tissues See more
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Genomic context

See LINC01679 in Genome Data Viewer
Location:
21q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (43358055..43362349, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (44777935..44782229, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9314 Neighboring gene long intergenic non-protein coding RNA 322 Neighboring gene uncharacterized LOC105377137 Neighboring gene uncharacterized LOC107987301

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study of the metabolic syndrome in Indian Asian men.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131902.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001046, BU736390, BX390224
    Related
    ENST00000442815.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    43358055..43362349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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