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LINC01679 long intergenic non-protein coding RNA 1679 [ Homo sapiens (human) ]

Gene ID: 101928399, updated on 10-Oct-2023

Summary

Official Symbol
LINC01679provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1679provided by HGNC
Primary source
HGNC:HGNC:52469
See related
Ensembl:ENSG00000237989 AllianceGenome:HGNC:52469
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_00029157
Expression
Broad expression in skin (RPKM 1.5), lymph node (RPKM 0.8) and 22 other tissues See more
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Genomic context

Location:
21q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (43358055..43362349, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (41713299..41717591, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (44777935..44782229, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44730914-44731414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44731415-44731915 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44733831-44734594 Neighboring gene long intergenic non-protein coding RNA 322 Neighboring gene putative uncharacterized protein encoded by LINC00322 Neighboring gene MPRA-validated peak4418 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44748650-44749536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44752021-44752551 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44752552-44753081 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44770223-44770882 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18537 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18538 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18539 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18540 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18541 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44779591-44780148 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44780149-44780705 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18542 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13360 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44783485-44784024 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:44784578-44785777 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44786021-44786699 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44786700-44787379 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44788731-44789288 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44789289-44789846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44793172-44793672 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44794790-44795323 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44805422-44806000 Neighboring gene MPRA-validated peak4419 silencer Neighboring gene long intergenic non-protein coding RNA 3039 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44817000-44817548 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44817549-44818097 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44818515-44819191 Neighboring gene uncharacterized LOC124905028

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study of the metabolic syndrome in Indian Asian men.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131902.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001046, BU736390, BX390224
    Related
    ENST00000442815.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    43358055..43362349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    41713299..41717591 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)