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IL12A-AS1 IL12A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101928376, updated on 25-Jan-2022

Summary

Official Symbol
IL12A-AS1provided by HGNC
Official Full Name
IL12A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49094
See related
Ensembl:ENSG00000244040 AllianceGenome:HGNC:49094
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ILAS1-AS1
Expression
Biased expression in esophagus (RPKM 1.2), testis (RPKM 0.4) and 3 other tissues See more
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Genomic context

See IL12A-AS1 in Genome Data Viewer
Location:
3q25.33
Exon count:
10
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (159913400..160207092, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (159631189..159924879, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene IQCJ-SCHIP1 readthrough Neighboring gene schwannomin interacting protein 1 Neighboring gene uncharacterized LOC101928351 Neighboring gene Sharpr-MPRA regulatory region 8585 Neighboring gene RNA, U2 small nuclear 31, pseudogene Neighboring gene long intergenic non-protein coding RNA 1100 Neighboring gene interleukin 12A Neighboring gene uncharacterized LOC107986149 Neighboring gene Sharpr-MPRA regulatory region 6612 Neighboring gene Sharpr-MPRA regulatory region 14309 Neighboring gene bromodomain containing 7 pseudogene 2 Neighboring gene TRIM59-IFT80 protein Neighboring gene chromosome 3 open reading frame 80 Neighboring gene intraflagellar transport 80 Neighboring gene ribosomal protein L35a pseudogene 10

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.
EBI GWAS Catalog
Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
EBI GWAS Catalog
Genome-wide association analysis identifies new susceptibility loci for Behçet's disease and epistasis between HLA-B*51 and ERAP1.
EBI GWAS Catalog
Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.
EBI GWAS Catalog
Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.
EBI GWAS Catalog
Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
EBI GWAS Catalog
Multiple common variants for celiac disease influencing immune gene expression.
EBI GWAS Catalog
Newly identified genetic risk variants for celiac disease related to the immune response.
EBI GWAS Catalog
Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_108088.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010370, AC112641
    Related
    ENST00000497452.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    159913400..160207092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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