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LINC03098 long intergenic non-protein coding RNA 3098 [ Homo sapiens (human) ]

Gene ID: 101928336, updated on 10-Oct-2023

Summary

Official Symbol
LINC03098provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3098provided by HGNC
Primary source
HGNC:HGNC:56745
See related
Ensembl:ENSG00000230392
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC03098 in Genome Data Viewer
Location:
Xq24
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (119291529..119335610)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (117669287..117713352)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (118425492..118469573)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20954 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20955 Neighboring gene progesterone receptor membrane component 1 Neighboring gene A-kinase anchoring protein 17B, pseudogene Neighboring gene Sharpr-MPRA regulatory region 13303 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20956 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:118453061-118453562 Neighboring gene mitochondrial ribosomal protein S17 pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20957 Neighboring gene solute carrier family 25 member 43 Neighboring gene RNA, U1 small nuclear 67, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110396.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004835, AC004973
    Related
    ENST00000428222.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    119291529..119335610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    117669287..117713352
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)