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LINC01943 long intergenic non-protein coding RNA 1943 [ Homo sapiens (human) ]

Gene ID: 101928173, updated on 29-Mar-2023

Summary

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Official Symbol
LINC01943provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1943provided by HGNC
Primary source
HGNC:HGNC:52767
See related
AllianceGenome:HGNC:52767
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in bone marrow (RPKM 2.4), lymph node (RPKM 1.6) and 12 other tissues See more
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Genomic context

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See LINC01943 in Genome Data Viewer
Location:
2p11.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (87439523..87502829, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (87451618..87514855, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87648777-87649739 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87724395-87725207 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87756227-87756812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:87762086-87762942 Neighboring gene cytoskeleton regulator RNA Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:87826545-87827046 Neighboring gene uncharacterized LOC107985909

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    87439523..87502829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087125.1 RNA Sequence

  2. XR_007087124.1 RNA Sequence

  3. XR_245039.4 RNA Sequence

  4. XR_001739578.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    87451618..87514855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072258.1 RNA Sequence

  2. XR_007072257.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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