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PTPRK-AS1 PTPRK antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101928140, updated on 23-Nov-2021

Summary

Official Symbol
PTPRK-AS1provided by HGNC
Official Full Name
PTPRK antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40484
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in gall bladder (RPKM 2.4), colon (RPKM 1.8) and 24 other tissues See more
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Genomic context

See PTPRK-AS1 in Genome Data Viewer
Location:
6q22.33
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (128027865..128086293)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (128349010..128407438)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112267973 Neighboring gene thymocyte selection associated Neighboring gene mitochondrial ribosomal protein S17 pseudogene 5 Neighboring gene protein tyrosine phosphatase receptor type K Neighboring gene eukaryotic translation elongation factor 1 delta pseudogene 5 Neighboring gene ribosomal protein L21 pseudogene 64

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
GeneReviews: Not available

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125849.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC033773

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    128027865..128086293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187556.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    377199..435627
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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