U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02444 long intergenic non-protein coding RNA 2444 [ Homo sapiens (human) ]

Gene ID: 101928137, updated on 10-Oct-2023

Summary

Official Symbol
LINC02444provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2444provided by HGNC
Primary source
HGNC:HGNC:53376
See related
Ensembl:ENSG00000258123 AllianceGenome:HGNC:53376
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC02444 in Genome Data Viewer
Location:
12q21.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (73159190..73208317)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (73137293..73186413)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (73552970..73602097)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene thyrotropin releasing hormone degrading enzyme Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:73033440-73033988 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:73102101-73102706 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:73209905-73210447 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:73266315-73267514 Neighboring gene uncharacterized LOC105369838 Neighboring gene MPRA-validated peak1829 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:73394447-73395222 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:73584169-73585368 Neighboring gene MPRA-validated peak1832 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:73683159-73683783 Neighboring gene uncharacterized LOC105369839 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:73709711-73710210 Neighboring gene uncharacterized LOC124902966

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study identifies genetic loci associated with body mass index and high density lipoprotein-cholesterol levels during psychopharmacological treatment - a cross-sectional naturalistic study.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110130.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090503
    Related
    ENST00000550723.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    73159190..73208317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    73137293..73186413
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)