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PRANCR progenitor renewal associated non-coding RNA [ Homo sapiens (human) ]

Gene ID: 101928062, updated on 23-Nov-2021

Summary

Official Symbol
PRANCRprovided by HGNC
Official Full Name
progenitor renewal associated non-coding RNAprovided by HGNC
Primary source
HGNC:HGNC:51126
See related
Ensembl:ENSG00000257815 MIM:619085
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CNOT2-DT; LINC01481
Expression
Ubiquitous expression in bone marrow (RPKM 4.1), testis (RPKM 2.9) and 25 other tissues See more
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Genomic context

See PRANCR in Genome Data Viewer
Location:
12q15
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (70222190..70243360, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (70615970..70637140, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene histone PARylation factor 1 pseudogene Neighboring gene long intergenic non-protein coding RNA 2821 Neighboring gene CCR4-NOT transcription complex subunit 2 Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 4 Neighboring gene RNA, U4 small nuclear 65, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • CNOT2 divergent transcript
  • long intergenic non-protein coding RNA 1481

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120459.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    CA418524, HY002672
    Related
    ENST00000549651.1
  2. NR_120460.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in both the 5' and 3' exon structures, resulting in a shorter transcript compared to variant 1.
    Source sequence(s)
    HY013176
  3. NR_120461.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in both the 5' and 3' exon structures, resulting in a shorter transcript compared to variant 1.
    Source sequence(s)
    DB462634, HY013176, HY048577
    Related
    ENST00000550216.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    70222190..70243360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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