U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

EPIST esophagus epithelial intergenic associated transcript [ Homo sapiens (human) ]

Gene ID: 101927953, updated on 13-May-2022

Summary

Official Symbol
EPISTprovided by HGNC
Official Full Name
esophagus epithelial intergenic associated transcriptprovided by HGNC
Primary source
HGNC:HGNC:49679
See related
Ensembl:ENSG00000249082 AllianceGenome:HGNC:49679
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C5orf66-AS1
Expression
Biased expression in salivary gland (RPKM 1.5), esophagus (RPKM 0.8) and 7 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See EPIST in Genome Data Viewer
Location:
5q31.1
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (135038831..135040047, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (135565846..135567062, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (134374521..134375737, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene cation channel sperm associated 3 Neighboring gene PITX1 antisense RNA 1 Neighboring gene paired like homeodomain 1 Neighboring gene uncharacterized LOC124901072 Neighboring gene long intergenic non-protein coding RNA 2900

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • C5orf66 antisense RNA 1
  • esophagus epithelial intergenic specific transcript

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_105049.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC008406, BE785577, BY798674
    Related
    ENST00000507035.2
  2. NR_105050.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC008406

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    135038831..135040047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    135565846..135567062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)