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LINC02660 long intergenic non-protein coding RNA 2660 [ Homo sapiens (human) ]

Gene ID: 101927904, updated on 29-Mar-2023

Summary

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Official Symbol
LINC02660provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2660provided by HGNC
Primary source
HGNC:HGNC:54146
See related
Ensembl:ENSG00000226005 AllianceGenome:HGNC:54146
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02660 in Genome Data Viewer
Location:
10p15.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (3912023..3935812)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (3915937..3939814)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:3935366-3936565 Neighboring gene CAGE-defined B cell enhancer downstream of LOC105376365 Neighboring gene uncharacterized LOC105376367 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:4001589-4002090

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183980.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513303

  2. NR_183981.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513303

  3. NR_183982.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513303

  4. NR_183983.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513303

  5. NR_183984.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513303

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    3912023..3935812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    3915937..3939814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases