U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01687 long intergenic non-protein coding RNA 1687 [ Homo sapiens (human) ]

Gene ID: 101927843, updated on 10-Oct-2023

Summary

Official Symbol
LINC01687provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1687provided by HGNC
Primary source
HGNC:HGNC:52474
See related
Ensembl:ENSG00000233215 AllianceGenome:HGNC:52474
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC01687 in Genome Data Viewer
Location:
21q21.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (22009158..22098459, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (20376772..20466084, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (23381477..23470778, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 317 Neighboring gene long intergenic non-protein coding RNA 1425 Neighboring gene MPRA-validated peak4378 silencer Neighboring gene MPRA-validated peak4379 silencer Neighboring gene Sharpr-MPRA regulatory region 9223 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:23448619-23449219 Neighboring gene long intergenic non-protein coding RNA 308 Neighboring gene phosphoglycerate kinase 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109959.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000454, BC039377
    Related
    ENST00000420255.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    22009158..22098459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    20376772..20466084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)