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TH2LCRR T helper type 2 locus control region associated RNA [ Homo sapiens (human) ]

Gene ID: 101927761, updated on 23-Nov-2021

Summary

Official Symbol
TH2LCRRprovided by HGNC
Official Full Name
T helper type 2 locus control region associated RNAprovided by HGNC
Primary source
HGNC:HGNC:40495
See related
Ensembl:ENSG00000223442
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TH2-LCR
Expression
Ubiquitous expression in testis (RPKM 5.8), thyroid (RPKM 3.5) and 25 other tissues See more
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Genomic context

See TH2LCRR in Genome Data Viewer
Location:
5q31.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (132630589..132656154, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (131966281..131991846, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene interferon regulatory factor 1 Neighboring gene interleukin 5 Neighboring gene RAD50 double strand break repair protein Neighboring gene Th2 cytokine locus control region Neighboring gene uncharacterized LOC105379176 Neighboring gene interleukin 13 Neighboring gene interleukin 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132124.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents a non-coding transcript.
    Source sequence(s)
    AA496113, DB527752
    Related
    ENST00000457489.1
  2. NR_132125.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has multiple differences compared to variant 1.
    Source sequence(s)
    BC042122
    Related
    ENST00000458509.1
  3. NR_132126.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has multiple differences compared to variant 1.
    Source sequence(s)
    AA470013, BC042122, BX095327
    Related
    ENST00000417516.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    132630589..132656154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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