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ALDH1A3-AS1 ALDH1A3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927751, updated on 23-Nov-2021

Summary

Official Symbol
ALDH1A3-AS1provided by HGNC
Official Full Name
ALDH1A3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55416
See related
Ensembl:ENSG00000259583
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in prostate (RPKM 21.6), urinary bladder (RPKM 9.2) and 15 other tissues See more
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Genomic context

See ALDH1A3-AS1 in Genome Data Viewer
Location:
15q26.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (100892343..100919283, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (101432548..101459488, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9420 Neighboring gene PHD finger protein 5H pseudogene Neighboring gene gastric cancer associated WDR5 and KAT2A binding lncRNA Neighboring gene aldehyde dehydrogenase 1 family member A3 Neighboring gene leucine rich repeat kinase 1 Neighboring gene Sharpr-MPRA regulatory region 1628 Neighboring gene uncharacterized LOC105371026

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135827.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015712, AK126286
    Related
    ENST00000656756.1
  2. NR_135828.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015712, AK126286, BC073817
    Related
    ENST00000560068.1
  3. NR_135831.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015712, AK126286, BC073817

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    100892343..100919283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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