U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ALDH1A3-AS1 ALDH1A3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927751, updated on 10-Oct-2023

Summary

Official Symbol
ALDH1A3-AS1provided by HGNC
Official Full Name
ALDH1A3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55416
See related
Ensembl:ENSG00000259583 AllianceGenome:HGNC:55416
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in prostate (RPKM 21.6), urinary bladder (RPKM 9.2) and 15 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
15q26.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (100892343..100919283, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (98647405..98673820, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (101432548..101459488, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9420 Neighboring gene gastric cancer associated WDR5 and KAT2A binding lncRNA Neighboring gene collagen alpha-1(I) chain-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6879 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101420568-101421082 Neighboring gene aldehyde dehydrogenase 1 family member A3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101458234-101458826 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6881 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101460013-101460604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101464364-101464864 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101464865-101465365 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:101466469-101466662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101469523-101470476 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10177 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10178 Neighboring gene leucine rich repeat kinase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10179 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6882 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10181 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101535857-101536844 Neighboring gene Sharpr-MPRA regulatory region 1628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10182 Neighboring gene Sharpr-MPRA regulatory region 13394 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:101567313-101568512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101568957-101569509 Neighboring gene uncharacterized LOC105371026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101586279-101586964 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:101587260-101587760 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:101587761-101588261 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101588398-101588922 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101588923-101589446 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101593635-101594255 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101602418-101603083 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101603084-101603748 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101607739-101608404 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101609069-101609734 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101609735-101610398 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:101610353-101610519 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:101616303-101616866 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101616867-101617428 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101617993-101618554 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101618555-101619118 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101619119-101619680 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101619681-101620242 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6883 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101641875-101642662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101642663-101643449 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101652194-101652980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101658577-101659078 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6884 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10183 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10184 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10185 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:101671452-101671651 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10186 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10187 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10188 Neighboring gene uncharacterized LOC124903565

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135827.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015712, AK126286
    Related
    ENST00000656756.1
  2. NR_135828.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015712, AK126286, BC073817
    Related
    ENST00000560068.1
  3. NR_135831.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015712, AK126286, BC073817

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    100892343..100919283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    98647405..98673820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)