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LOC101927745 uncharacterized LOC101927745 [ Homo sapiens (human) ]

Gene ID: 101927745, updated on 10-Dec-2024

Summary

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Gene symbol
LOC101927745
Gene description
uncharacterized LOC101927745
See related
Ensembl:ENSG00000229425
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101927745 in Genome Data Viewer
Location:
21q21.1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (15368950..15444656, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (13724407..13800115, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (16741269..16816975, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905047 Neighboring gene CRISPRi-validated cis-regulatory element chr21.79 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:16594333-16594922 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:16614113-16614728 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:16614729-16615343 Neighboring gene uncharacterized LOC105369292 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:16662777-16663306 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr21:16665453-16666075 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:16698845-16699655 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr21:16738058-16739257 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:16739664-16740201 Neighboring gene uncharacterized LOC124905055 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr21:16817247-16818016 Neighboring gene Sharpr-MPRA regulatory region 2263 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13218 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:16860730-16860938 Neighboring gene CYCS pseudogene 42 Neighboring gene uncharacterized LOC105369302 Neighboring gene uncharacterized LOC124905056

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Clone Names

  • AJ006998.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188234.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF246928, AJ006998

  2. NR_188235.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF246928, AJ006998
    Related
    ENST00000828213.1

  3. NR_188236.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF246928, AJ006998

  4. NR_188237.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF246928, AJ006998

  5. NR_188238.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF246928, AJ006998

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    15368950..15444656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    13724407..13800115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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