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LINC01644 long intergenic non-protein coding RNA 1644 [ Homo sapiens (human) ]

Gene ID: 101927722, updated on 13-May-2022

Summary

Official Symbol
LINC01644provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1644provided by HGNC
Primary source
HGNC:HGNC:52431
See related
Ensembl:ENSG00000218357 AllianceGenome:HGNC:52431
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LL22NC03-75H12.2
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01644 in Genome Data Viewer
Location:
22q13.31
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (47461299..47487111, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (47952541..47978350, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (47857048..47882860, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC339685 Neighboring gene Sharpr-MPRA regulatory region 13395 Neighboring gene long intergenic non-protein coding RNA 898 Neighboring gene Sharpr-MPRA regulatory region 4711 Neighboring gene epigenetically induced MYC interacting lncRNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109967.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC037972
    Related
    ENST00000405369.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    47461299..47487111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    47952541..47978350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)