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SEPTIN4-AS1 SEPTIN4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927688, updated on 25-Jan-2022

Summary

Official Symbol
SEPTIN4-AS1provided by HGNC
Official Full Name
SEPTIN4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51345
See related
Ensembl:ENSG00000264672 AllianceGenome:HGNC:51345
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SEPT4-AS1
Expression
Broad expression in brain (RPKM 17.9), adrenal (RPKM 13.0) and 15 other tissues See more
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Genomic context

See SEPTIN4-AS1 in Genome Data Viewer
Location:
17q22
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (58519837..58556925)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (56597198..56634286)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene heat shock transcription factor 5 Neighboring gene SET pseudogene 3 Neighboring gene myotubularin related protein 4 Neighboring gene septin 4 Neighboring gene uncharacterized LOC107985048 Neighboring gene testis expressed 14, intercellular bridge forming factor Neighboring gene uncharacterized LOC105371842

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.
EBI GWAS Catalog
Meta-analysis identifies four new loci associated with testicular germ cell tumor.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110810.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CK429595
    Related
    ENST00000580589.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    58519837..58556925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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