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NCK1-DT NCK1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101927597, updated on 2-Jan-2022

Summary

Official Symbol
NCK1-DTprovided by HGNC
Official Full Name
NCK1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:49645
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCK1-AS1; SLC35G2-AS1
Expression
Ubiquitous expression in lymph node (RPKM 2.8), spleen (RPKM 2.7) and 25 other tissues See more
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Genomic context

See NCK1-DT in Genome Data Viewer
Location:
3q22.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (136841976..136862063, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (136560818..136580905, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene stromal antigen 1 Neighboring gene DnaJ heat shock protein family (Hsp40) member C8 pseudogene Neighboring gene RNA, U6 small nuclear 789, pseudogene Neighboring gene solute carrier family 35 member G2 Neighboring gene RAD51AP1 pseudogene 1 Neighboring gene NCK adaptor protein 1 Neighboring gene IL20RB antisense RNA 1 Neighboring gene interleukin 20 receptor subunit beta

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • NCK1 antisense RNA 1 (head to head)
  • SLC35G2 antisense RNA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110175.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AA708729, AC011597, HY007950
  2. NR_110176.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site and lacks an internal exon resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AA708729, AC011597, CB047433
  3. NR_110177.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AA708729, AC011597, DA714434, HY007950

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    136841976..136862063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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