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LINC01725 long intergenic non-protein coding RNA 1725 [ Homo sapiens (human) ]

Gene ID: 101927587, updated on 17-Jun-2024

Summary

Official Symbol
LINC01725provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1725provided by HGNC
Primary source
HGNC:HGNC:52513
See related
Ensembl:ENSG00000233008 AllianceGenome:HGNC:52513
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01725 in Genome Data Viewer
Location:
1p31.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (83575787..83860996, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (83416097..83701343, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (84041470..84326679, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1242 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1243 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1244 Neighboring gene uncharacterized LOC107985043 Neighboring gene ADP ribosylation factor 4 pseudogene 5 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:84157955-84158489 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:84158490-84159025 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1008 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1245 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1009 Neighboring gene uncharacterized LOC101927560 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1010 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1011 Neighboring gene tubulin tyrosine ligase like 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1012 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1013 Neighboring gene uncharacterized LOC124904205 Neighboring gene TTLL7 intronic transcript 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association with select biomarker traits in the Framingham Heart Study.
EBI GWAS Catalog
Genome-wide scan of copy number variation in late-onset Alzheimer's disease.
EBI GWAS Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_119375.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098654, AL035706, BC036594
    Related
    ENST00000417975.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    83575787..83860996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    83416097..83701343 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)