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LINC02141 long intergenic non-protein coding RNA 2141 [ Homo sapiens (human) ]

Gene ID: 101927580, updated on 25-Jan-2022

Summary

Official Symbol
LINC02141provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2141provided by HGNC
Primary source
HGNC:HGNC:53001
See related
Ensembl:ENSG00000261807 AllianceGenome:HGNC:53001
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LINC02141 in Genome Data Viewer
Location:
16q21
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (59855353..60053973)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (59889257..60087877)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene double homeobox A pseudogene 11 Neighboring gene apolipoprotein O pseudogene 5 Neighboring gene uncharacterized LOC105371300 Neighboring gene uncharacterized LOC105371299 Neighboring gene NOP58 ribonucleoprotein homolog (yeast) pseudogene Neighboring gene uncharacterized LOC101927605 Neighboring gene nuclear pore associated protein 1 like Neighboring gene glyceronephosphate O-acyltransferase pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.
EBI GWAS Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110917.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009094, AC092350
    Related
    ENST00000568279.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    59855353..60053973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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