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LOC101927556 uncharacterized LOC101927556 [ Homo sapiens (human) ]

Gene ID: 101927556, updated on 21-Mar-2023

Summary

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Gene symbol
LOC101927556
Gene description
uncharacterized LOC101927556
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in skin (RPKM 10.4), testis (RPKM 5.5) and 25 other tissues See more
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Genomic context

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See LOC101927556 in Genome Data Viewer
Location:
16q21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (58128884..58160424)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (63924697..63955266)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 15 Neighboring gene TIMELESS interacting protein pseudogene Neighboring gene cilia and flagella associated protein 20 Neighboring gene casein kinase 2 alpha 2 Neighboring gene RNA, 7SL, cytoplasmic 645, pseudogene Neighboring gene Sharpr-MPRA regulatory region 11051

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    58128884..58160424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_933633.4 RNA Sequence

  2. XR_243455.6 RNA Sequence

  3. XR_933632.4 RNA Sequence

  4. XR_001752222.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    63924697..63955266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086406.1 RNA Sequence

  2. XR_007086404.1 RNA Sequence

  3. XR_007086407.1 RNA Sequence

  4. XR_007086405.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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