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TLE1-DT TLE1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101927502, updated on 25-Jan-2022

Summary

Official Symbol
TLE1-DTprovided by HGNC
Official Full Name
TLE1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55701
See related
Ensembl:ENSG00000233926 AllianceGenome:HGNC:55701
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See TLE1-DT in Genome Data Viewer
Location:
9q21.32
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (81689713..81776900)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (84304628..84391815)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene TLE family member 1, transcriptional corepressor Neighboring gene Sharpr-MPRA regulatory region 9381 Neighboring gene VISTA enhancer hs556 Neighboring gene RNA, U6 small nuclear 1035, pseudogene Neighboring gene uncharacterized LOC105376108 Neighboring gene RNA, 5S ribosomal pseudogene 287 Neighboring gene SPATA31 subfamily D member 5, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.
EBI GWAS Catalog
Multiple loci influencing hippocampal degeneration identified by genome scan.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109772.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365190, AL591368, BC036431
    Related
    ENST00000437181.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    81689713..81776900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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