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LINC01609 long intergenic non-protein coding RNA 1609 [ Homo sapiens (human) ]

Gene ID: 101927487, updated on 17-Sep-2024

Summary

Official Symbol
LINC01609provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1609provided by HGNC
Primary source
HGNC:HGNC:51663
See related
Ensembl:ENSG00000253103 AllianceGenome:HGNC:51663
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01609 in Genome Data Viewer
Location:
8q23.2-q23.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (111098961..111236203, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (112227589..112364472, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (112111190..112248432, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1608 Neighboring gene MT-ND2 pseudogene 35 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:112162713-112163264 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:112163265-112163814 Neighboring gene uncharacterized LOC107986965 Neighboring gene uncharacterized LOC105375705 Neighboring gene uncharacterized LOC107986964 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27817 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 37 Neighboring gene serpin family A member 15, pseudogene Neighboring gene long intergenic non-protein coding RNA 2237 Neighboring gene Sharpr-MPRA regulatory region 2751 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:112623679-112624180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:112624181-112624680 Neighboring gene H2A.Z histone pseudogene 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125418.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104946, BI459905, DB448904
    Related
    ENST00000519506.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    111098961..111236203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    112227589..112364472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)