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SMIM36 small integral membrane protein 36 [ Homo sapiens (human) ]

Gene ID: 101927367, updated on 23-Mar-2024

Summary

Official Symbol
SMIM36provided by HGNC
Official Full Name
small integral membrane protein 36provided by HGNC
Primary source
HGNC:HGNC:53654
See related
Ensembl:ENSG00000261873 AllianceGenome:HGNC:53654
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 5.8) See more
Orthologs
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Genomic context

See SMIM36 in Genome Data Viewer
Location:
17q22
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (55449856..55532147, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (56325061..56408238, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (53527224..53588813, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8731 Neighboring gene VISTA enhancer hs2291 Neighboring gene Sharpr-MPRA regulatory regions 2486 and 1497 Neighboring gene HLF transcription factor, PAR bZIP family member Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:53398039-53398539 Neighboring gene Sharpr-MPRA regulatory region 10605 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8732 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8733 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8734 Neighboring gene monocyte to macrophage differentiation associated Neighboring gene MPRA-validated peak2902 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12415 Neighboring gene uncharacterized LOC124904034 Neighboring gene glycyl-tRNA synthetase 1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General protein information

Preferred Names
small integral membrane protein 36

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395421.2NP_001382350.1  small integral membrane protein 36

    Status: VALIDATED

    Source sequence(s)
    AC006269
    Consensus CDS
    CCDS92361.1
    UniProtKB/Swiss-Prot
    A0A1B0GVT2
    Related
    ENSP00000490644.1, ENST00000636752.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    55449856..55532147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047435095.1XP_047291051.1  small integral membrane protein 36 isoform X1

  2. XM_047435094.1XP_047291050.1  small integral membrane protein 36 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    56325061..56408238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054314667.1XP_054170642.1  small integral membrane protein 36 isoform X1

  2. XM_054314666.1XP_054170641.1  small integral membrane protein 36 isoform X1