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LINC01571 long intergenic non-protein coding RNA 1571 [ Homo sapiens (human) ]

Gene ID: 101927364, updated on 10-Oct-2023

Summary

Official Symbol
LINC01571provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1571provided by HGNC
Primary source
HGNC:HGNC:51384
See related
AllianceGenome:HGNC:51384
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in thyroid (RPKM 4.6) and kidney (RPKM 1.7) See more
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Genomic context

Location:
16q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (51762519..51772646)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (57560353..57570480)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (51796430..51806557)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51685231-51685835 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 like 3 Neighboring gene RN7SK pseudogene 142 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:51738563-51738778 Neighboring gene uncharacterized LOC105371257 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51807178-51807678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51807679-51808179 Neighboring gene NANOG hESC enhancer GRCh37_chr16:51888422-51888923 Neighboring gene uncharacterized LOC124903765 Neighboring gene VISTA enhancer hs65 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51987528-51988033 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51988034-51988538 Neighboring gene uncharacterized LOC105371259

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110916.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC109600

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    51762519..51772646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    57560353..57570480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)