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MANEA-DT MANEA divergent transcript [ Homo sapiens (human) ]

Gene ID: 101927288, updated on 10-Oct-2023

Summary

Official Symbol
MANEA-DTprovided by HGNC
Official Full Name
MANEA divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:43732
See related
Ensembl:ENSG00000261366 AllianceGenome:HGNC:43732
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MANEA-AS1
Expression
Ubiquitous expression in fat (RPKM 1.6), testis (RPKM 1.5) and 24 other tissues See more
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Genomic context

See MANEA-DT in Genome Data Viewer
Location:
6q16.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (95560096..95577451, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (96731046..96748401, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (96007972..96025327, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377901 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:95263598-95264402 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:95266514-95267437 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:95268361-95269283 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:95269284-95270205 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24838 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:95534248-95534846 Neighboring gene Sharpr-MPRA regulatory region 1325 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:95583098-95583762 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:95583763-95584426 Neighboring gene NANOG hESC enhancer GRCh37_chr6:95865708-95866213 Neighboring gene MPRA-validated peak5964 silencer Neighboring gene MPRA-validated peak5965 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:95996896-95997512 Neighboring gene Sharpr-MPRA regulatory region 13210 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17404 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17405 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:96025507-96026447 Neighboring gene CYCS pseudogene 17 Neighboring gene MPRA-validated peak5967 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:96083096-96083596 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:96083597-96084097 Neighboring gene uncharacterized LOC107986543 Neighboring gene mannosidase endo-alpha

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • MANEA antisense RNA 1 (head to head)
  • MANEA antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047502.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL671884
    Related
    ENST00000564541.1
  2. NR_104136.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks the 3' segment and contains two alternate 3' exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL671884

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    95560096..95577451 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    96731046..96748401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)