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LINC01474 long intergenic non-protein coding RNA 1474 [ Homo sapiens (human) ]

Gene ID: 101927258, updated on 23-Nov-2021

Summary

Official Symbol
LINC01474provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1474provided by HGNC
Primary source
HGNC:HGNC:51111
See related
Ensembl:ENSG00000236849
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01474 in Genome Data Viewer
Location:
9q21.13
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (72871728..72874109, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (75486644..75489025, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene transmembrane channel like 1 Neighboring gene ribosomal protein S20 pseudogene 24 Neighboring gene RPS27A pseudogene 15 Neighboring gene aldehyde dehydrogenase 1 family member A1 Neighboring gene cytochrome P450 family 1 subfamily D member 1, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121120.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AA528517, BE391770, BE729650
    Related
    ENST00000449235.5
  2. NR_121180.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AA528517, AL591031, BE391770, BE893827
    Related
    ENST00000423171.6
  3. NR_121181.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses alternate splice sites at the 5' and 3' terminal exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AA528517, AL591031, BE391770
    Related
    ENST00000654093.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    72871728..72874109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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