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HNF4A-AS1 HNF4A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927219, updated on 23-Nov-2021

Summary

Official Symbol
HNF4A-AS1provided by HGNC
Official Full Name
HNF4A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49505
See related
Ensembl:ENSG00000229005
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
uc002xlx
Expression
Biased expression in small intestine (RPKM 6.4), liver (RPKM 5.2) and 2 other tissues See more
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Genomic context

See HNF4A-AS1 in Genome Data Viewer
Location:
20q13.12
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (44356744..44395706, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (43006383..43024346, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene fat storage inducing transmembrane protein 2 Neighboring gene R3H domain containing like Neighboring gene R3HDML antisense RNA 1 Neighboring gene hepatocyte nuclear factor 4 alpha Neighboring gene microRNA 3646 Neighboring gene long intergenic non-protein coding RNA 1430

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109949.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF143870
    Related
    ENST00000452481.1
  2. NR_172878.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL117382
  3. NR_172879.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL117382

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    44356744..44395706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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