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SAMMSON survival associated mitochondrial melanoma specific oncogenic non-coding RNA [ Homo sapiens (human) ]

Gene ID: 101927152, updated on 13-May-2022

Summary

Official Symbol
SAMMSONprovided by HGNC
Official Full Name
survival associated mitochondrial melanoma specific oncogenic non-coding RNAprovided by HGNC
Primary source
HGNC:HGNC:49644
See related
Ensembl:ENSG00000240405 MIM:616895; AllianceGenome:HGNC:49644
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01212
Expression
Low expression observed in reference dataset See more
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Genomic context

See SAMMSON in Genome Data Viewer
Location:
3p13
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (69999744..70015301)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (70036702..70052259)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (70048895..70064452)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene melanocyte inducing transcription factor Neighboring gene MITF-M distal enhancer Neighboring gene MITF-M promoter region Neighboring gene RNA binding region (RNP1, RRM) containing 3 pseudogene 1 Neighboring gene ubiquinol-cytochrome c reductase hinge protein pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • long intergenic non-protein coding RNA 1212
  • survival associated mitochondrial melanoma specific oncogenic noncoding RNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110000.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104449, BC015590
    Related
    ENST00000483525.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    69999744..70015301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    70036702..70052259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)