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LINC02987 long intergenic non-protein coding RNA 2987 [ Homo sapiens (human) ]

Gene ID: 101927151, updated on 24-Dec-2021

Summary

Official Symbol
LINC02987provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2987provided by HGNC
Primary source
HGNC:HGNC:56093
See related
Ensembl:ENSG00000267575
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 2.9), prostate (RPKM 2.2) and 25 other tissues See more
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Genomic context

See LINC02987 in Genome Data Viewer
Location:
19q11
Exon count:
21
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (27793431..28024969)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (28284339..28515876)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1 pseudogene 1 Neighboring gene uncharacterized LOC105372345 Neighboring gene uncharacterized LOC105372348 Neighboring gene uncharacterized LOC105372347 Neighboring gene long intergenic non-protein coding RNA 662 Neighboring gene zinc finger protein 709 pseudogene Neighboring gene uncharacterized LOC105372346 Neighboring gene solute carrier family 25 member 1 pseudogene 5 Neighboring gene vomeronasal 1 receptor 95 pseudogene Neighboring gene uncharacterized LOC107985269 Neighboring gene SHC binding and spindle associated 1 pseudogene Neighboring gene uncharacterized LOC105372349

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110687.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006504
    Related
    ENST00000669503.1
  2. NR_110688.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006504
    Related
    ENST00000585917.6
  3. NR_110689.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006504
    Related
    ENST00000659857.2
  4. NR_110690.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006504
    Related
    ENST00000692210.1
  5. NR_110691.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006504
    Related
    ENST00000590628.1
  6. NR_146733.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) contains an alternate 3' exon structure and is longer than variant 1.
    Source sequence(s)
    AC005357, AC005758, AC006504, AC020944, AC022153
  7. NR_146734.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) contains an alternate 3' exon strcture and is longer than variant 1.
    Source sequence(s)
    AC005357, AC005758, AC006504, AC022153
  8. NR_146735.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) contains an alternate 3' exon structure compared to variant 1.
    Source sequence(s)
    AC005357, AC005758, AC006504
  9. NR_146736.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) differs in the 3' terminal exon compared to variant 1.
    Source sequence(s)
    AC006504
    Related
    ENST00000668903.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    27793431..28024969
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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