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LINC02987 long intergenic non-protein coding RNA 2987 [ Homo sapiens (human) ]

Gene ID: 101927151, updated on 21-Mar-2023

Summary

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Official Symbol
LINC02987provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2987provided by HGNC
Primary source
HGNC:HGNC:56093
See related
Ensembl:ENSG00000267575
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 2.9), prostate (RPKM 2.2) and 25 other tissues See more
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Genomic context

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See LINC02987 in Genome Data Viewer
Location:
19q11
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (27793431..28024969)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (30321225..30554644)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (28284339..28515876)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:27897397-27897916 Neighboring gene uncharacterized LOC105372345 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:28286227-28287008 Neighboring gene long intergenic non-protein coding RNA 662 Neighboring gene solute carrier family 25 member 1 pseudogene 5 Neighboring gene uncharacterized LOC105372348 Neighboring gene vomeronasal 1 receptor 95 pseudogene Neighboring gene uncharacterized LOC105372347 Neighboring gene zinc finger protein 709 pseudogene Neighboring gene uncharacterized LOC105372346 Neighboring gene NANOG hESC enhancer GRCh37_chr19:28621443-28621988 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:28659458-28660167

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110687.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006504
    Related
    ENST00000669503.1

  2. NR_110688.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006504
    Related
    ENST00000585917.6

  3. NR_110689.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006504
    Related
    ENST00000659857.2

  4. NR_110690.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006504
    Related
    ENST00000692210.2

  5. NR_110691.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006504
    Related
    ENST00000590628.1

  6. NR_146733.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) contains an alternate 3' exon structure and is longer than variant 1.
    Source sequence(s)
    AC005357, AC005758, AC006504, AC020944, AC022153

  7. NR_146734.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) contains an alternate 3' exon strcture and is longer than variant 1.
    Source sequence(s)
    AC005357, AC005758, AC006504, AC022153

  8. NR_146735.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) contains an alternate 3' exon structure compared to variant 1.
    Source sequence(s)
    AC005357, AC005758, AC006504

  9. NR_146736.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) differs in the 3' terminal exon compared to variant 1.
    Source sequence(s)
    AC006504
    Related
    ENST00000668903.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    27793431..28024969
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    30321225..30554644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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