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CLMAT3 colorectal liver metastasis associated transcript 3 [ Homo sapiens (human) ]

Gene ID: 101927096, updated on 23-Nov-2021

Summary

Official Symbol
CLMAT3provided by HGNC
Official Full Name
colorectal liver metastasis associated transcript 3provided by HGNC
Primary source
HGNC:HGNC:52287
See related
Ensembl:ENSG00000249035
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPARC-AS1; CTB-113P19.1
Expression
Broad expression in fat (RPKM 19.7), placenta (RPKM 11.8) and 18 other tissues See more
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Genomic context

See CLMAT3 in Genome Data Viewer
Location:
5q33.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (151676945..151687910)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (151056506..151067471)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene solute carrier family 36 member 1 Neighboring gene FAT atypical cadherin 2 Neighboring gene microRNA 6499 Neighboring gene uncharacterized LOC105378231 Neighboring gene secreted protein acidic and cysteine rich Neighboring gene RN7SK pseudogene 232 Neighboring gene ATOX1 antisense RNA 1 Neighboring gene antioxidant 1 copper chaperone

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109873.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011374
    Related
    ENST00000510576.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    151676945..151687910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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